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SRX22985826: TraDIS of E. coli strain AB_00116
1 ILLUMINA (Illumina NovaSeq 6000) run: 12.6M spots, 3.8G bases, 1.1Gb downloads

Design: TruSeq-TruSeq
Submitted by: University of Illinois at Chicago
Study: E. coli TraDIS
show Abstracthide Abstract
We conducted Transposon Directed Insertion-Site Sequencing (TraDIS) on three different strains of Escherichia coli. We determined the number of unique mutants: 1) as a function of recovery time after electroporation (0.5, 1 or 2 hrs); and 2) as a function of selection medium (agar plates or liquid broth). For the recovery analysis, we also compared the recovery of transposon-DNA junctions based on the layout of sequencing library fragments (Nextera-TruSeq hybrid, or TruSeq-TruSeq).
Sample:
SAMN32739211 • SRS16452435 • All experiments • All runs
Library:
Name: AB116-1h-Tru
Instrument: Illumina NovaSeq 6000
Strategy: Tn-Seq
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 12.6M spots, 3.8G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR2730852912,618,6923.8G1.1Gb2024-03-21

ID:
31057245

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